UNCERT User's Guide: Table of Contents
Version 1.16

A Geostatistical Uncertainty Analysis Package Applied to Groundwater Flow and Contaminant Transport Modeling.

Developed By:

William L. Wingle , Eileen P. Poeter , and Sean A. McKenna .
Department of Geology and Geological Engineering
Colorado School of Mines
Golden, Colorado 80401

This work funded by:

United States Bureau of Reclamation
United States Amry Corps of Engineers, Waterways Experiment Station
Sandia National Laboratories
Copyright © 1994,1995,1996,1997 Colorado School of Mines, Department of Geology and Geological Engineering. All rights reserved.

TABLE OF CONTENTS (Short)

TABLE OF CONTENTS (Long)


UNCERT - TABLE OF CONTENTS (Short)

Chapter 1: Introduction (to expanded))
Chapter 2: Installation (to expanded)
Chapter 3: X-Windows and Motif (to expanded)
Chapter 4: Mainmenu (uncert) (to expanded)
Chapter 5: Plotgraph (to expanded)
Chapter 6: Histo(gram) (to expanded)
Chapter 7: Distribution Comparison (distcomp) (to expanded)
Chapter 8: Vario (to expanded)
Chapter 9: Variofit (to expanded)
Chapter 10: Grid (to expanded)
Chapter 11: Contour (to expanded)
Chapter 12: Surface (to expanded)
Chapter 13: Block (to expanded)
Chapter 14: SISIM & SISIM3D (to expanded)
Chapter 15: Modmain (to expanded)
Chapter 16: Mt3dmain (to expanded)
Chapter 17: Array (to expanded)
Chapter 18: Utilities (to expanded)

Appendix A: C Print Formats (to expanded)
Appendix B: Makefile and Source Code Requirements (to expanded)
Appendix C: Preference Files (to expanded)
Appendix D: X Resource Files (to expanded)
Appendix E: Help Files (to expanded)
Appendix F: Bibliography (to expanded)
Appendix G: Software Contributions to UNCERT (to expanded)


TABLE OF CONTENTS (Long)

Chapter 1: Introduction

The UNCERT Project
Introduction

Chapter 2: Installation

Information and Comments
Warranty
Hardware / Operating System Requirements
Acquiring Software
Installation
Unpacking the Software
Compiling UNCERT
Setting Up User Accounts

Chapter 3: X-Windows and Motif

The Application Window
Pull-Down Menus
Pop-up Dialogs
Buttons
Scrolled Text
Slider Bar
Text Fields
Toggles
Toggle Menus
Option Menu Lists

Chapter 4: Mainmenu (uncert)

The Main Menu
File
Data Analysis
Array
Distcomp
Graph
Histogram
Geostatistics
Semivariogram Analysis
Semivariogram Fit
Grid
SISIM3D
Modeling
MODFLOW
MT3D
Visualization
Block
Contour
Surface
Help
Running from the Command Line

Chapter 5: Plotgraph

The Main Menu
File
Open
Add
View
Save
Save as
Save Preferences
Print Setup
Print
Quit
Quit Without Saving
Data
Curve Fitting
Graph
Axes
Border
Fonts
Labels
Mesh
Style
Log
Plot
Now
Refresh
Help
Zoom and Mouse Control
Location
Refresh
Zoom
Example of Using Plotgraph
Running From the Command Line
Setting up the Input Data File
Basic
Repeated X Value with Many matching Y Values
Multiple Lines
GEO-EAS/GSLIB Files
Plotgraph Mathematics
Theory of Least-Squares Regression
Bibliography (plotgraph)

Chapter 6: Histo(gram)

The Main Menu
File
Open
View
Save Preferences
Print Setup
Print
Quit
Data
Style
Plot Type
Histograms
Box and Whisker Plots
Cumulative Distributions
1.0 - Cumulative Distributions
Probability Plots
Y-Axis Type
Transform Type
Statistics
Display
Tabulated
Graph
Border
Fonts
Labels
Line Styles
Mesh
Plot
Log
Help
Zoom and Mouse Control
Example of Using Histo
Running From the Command Line
Setting up the Input Data File
Column
No Header Column Data
Variable Length Columns
GEO-EAS/GSLIB
Gridded
Histo Mathematics
Classical Statistics
Calculation of Normal-Distribution and the Development of a Probability Distribution Graph Axis
Normal-distribution with associated z values
Bibliography (histo)

Chapter 7: Distribution Comparison (distcomp)

Chapter 8: Vario

The Main Menu
File
Open
View
View Results
Save
Save as
Save Preferences
Print Setup
Print
Quit
Quit Without Saving
Experimental
Data
Soft Data
Indicator Threshold
Search Parameters
Point (Irregular) Data
Gridded Data
Spatial Equations
Covariance View
2D Semivariogram
Search Parameters
Calculate
Calculate
Jackknifing
Modify
Individual Display
Calculate
Graph
Border
Error-Bar Style
Fonts
Labels
Legends
Mesh
Style
Log
Plot
Model
Help
Example of Using Vario
Running From the Command Line
Setting up the Input Data File
Uncertainty File
Vario Mathematics
Semivariogram
Cross-Semivariogram
Covariance
Correlogram
General Relative Semi-semivariogram
Pairwise Relative Semi-semivariogram
Semivariograms of Logarithms
Semirodogram
Semimadogram
Indicator Semivariogram
Indicator Covariance
Soft Data Theory
What Are Soft Data?
Bayesian Statistics
Bayesian Analysis of Hard Data
Bayesian Analysis of Soft Data (A)
Bayesian Analysis of Soft Data (B)
Bayesian Analysis of Soft Data (C)
Indicator Coding of Soft Data
Hard Data
Soft Data, Type A
Soft Data, Type B
Soft Data, Type C
Improving Semivariogram Estimates With Soft Data
Improving Covariance Estimates with Type A Soft Data
Improving Semivariogram Estimates With Type B Soft Data
Improving Semivariogram Estimates With Type C Soft Data
Jackknifing
Bibliography (vario)

Chapter 9: Variofit

The Main Menu
File
Open
View Data
View Results
Save
Save as
Save Preferences
Print Setup
Print
Quit
Quit Without Saving
Regression
Calculation Method
Automatic
Manual
Parameters
Slider Fitting
Solution Method
Calculate
Jackknife
Modify
Individual Display
Latin-Hypercube
Parameters
Individual Display
Save
Save as
Calculate
Series
Display
Parameters
Graph
Border
Error-Bar Style
Fonts
Labels
Legends
Data Parameters
Model Parameters
Mesh
Style
Log
Plot
Help
Example of Using Variofit
Loading a Pre-Existing Experimental Semivariogram
Calculating a Single Model Semivariogram - Automatic Mode
Calculating a Single Model Semivariogram - Manual Mode
Calculating Multiple Latin-Hypercube Sampled Model Semivariograms
Running From the Command Line
Setting up the Input Data File
Single Models
Jackknifed Models
Output Data File Formats
Single Models
Latin-Hypercube Sampled Models
Variofit Mathematics
Experimental Semivariogram Calculation
Automated Semivariogram Fit
Modified Least-Squares Regressions
Latin-Hypercube Sampling
Bibliography (variofit)

Chapter 10: Grid

The Main Menu
File
Open
View
Save Preferences
Quit
Quit Without Saving
Method
Inverse-Distance
Ordinary Kriging (GSLIB)
Model Semivariograms
Search parameters
Drift Parameters
Zonation Parameters
Trend-Surface Analysis
Calculate
Grid
2D-Grid
3D-Grid
Calculate
Log
View
Help
Example of Using Grid
Inverse-Distance Example
Trend-Surface Analysis Example
Running From the Command Line
Setting up the Input Data File
Output Files
Grid Mathematics
Inverse-Distance Mathematics
Kriging Mathematics
Trend-Surface Analysis Mathematics
Analysis of Variance (ANOVA) Mathematics for Trend-Surface
Regressions
Bibliography (grid)

Chapter 11: Contour

The Main Menu
File
Open
View
Save Preferences
Print Setup
Print
Quit
Blanking (& Line Drawing)
Contour
Active Plane
Parameters
Gradient
Posting
Graph
Border
Fonts
Labels
Mesh
Scale
Palette
Set Palette
Color Legend
Plot
Profile
File
Save
Save as
Print Setup
Print
Quit
Line
Random Line
Fixed Start Line
Specify Line Coordinates
Graph
Border
Labels
Graph
Section
Mesh
General Comments
Graph Appearance
Plotting Profile Line on Contour Map
Removing Profile Lines
Help
Zoom and Mouse Control
Position of Mouse on Map
Zoom
Example of Using contour
Running From the Command Line
Setting up Input Files
The Standard UNCERT Grid Formats
Grid Centered
Node Centered
Other Grid File Formats
SURFER
GSLIB
Setting up a Blanking File
Setting up a Posting File
Setting up a Palette File
Contour Mathematics
Slope Gradient Determination
Bibliography (contour)

Chapter 12: Surface

The Main Menu
File
Open
View
Save Preferences
Print Setup
Print
Quit
View
Active Plane
View Type
Parameters
Gradient
Palette
Fonts
Log
Plot
Help
Example of Using surface
Running From the Command Line
Setting up the Input File
Surface Mathematics
Rotations and Transformations
Hidden Surface and Line Removal
Parallel Transformation
Back to Front Drawing
Surface Shading With Shaded Relief
Slope-Gradient Determination
Bibliography (surface)

Chapter 13: Block

The Main Menu
File
Open
Open SU
View
Save Preferences
Print Setup
Print
Quit
View
Data Range
Bench
Blank
Post
Palette
Fonts
Log
Plot
Help
Example of Using block
Running From the Command Line
Setting up the Input File
Equal Dimensions
Equally Spaced
Non-Equal Dimensions
Non-Gridded Files
Blanking Files
Block Mathematics
Bibliography (block)

Chapter 14: SISIM & SISIM3D

The Main Menu
Project
Open Project
View Project
Save Project
Save Project as
Quit
Quit Without Saving
Packages
Configuration
Open Configuration
View Configuration
Save
Save as
Modify
Data
Select Data File
View Data File
Geometry
Open Geometry
View Geometry
Save
Save as
Modify
Semivariogram
Single
Open Semivariogram
View Semivariogram
Save
Save as
Modify
Latin-Hypercube Solutions
Open Semivariograms
View Semivariograms
Uncertainty
Select Uncertainty File
View Uncertainty File
Simulator
Network
Mode
Select Computer List
View Computer List
Select Computers
Run
Statistics
Model Summary
Individual Simulation
All Simulations
View
Log
Help
Example of Using Sisim
Running From the Command Line
Command Line Options for Running ISIM3D
Sisim Input Data Files
Project Files
Configuration Files (sisim3d)
Data Files (sisim3d)
Geometry Files (sisim3d)
Semivariogram Files (sisim3d)
Uncertainty Files (sisim3d)
Latin-Hypercube Semivariogram Files
Computer List Files
.netrc
Sisim Output Data Files
Debug
Block & sisim3d Output
Kriging and Indicator Kriging
Stochastic Simulation
Bibliography (sisim)

Chapter 15: Modmain

The Main Menu
Project
Open Project
View Project
Save Project
Save Preferences
Quit
Quit Without Saving
Packages
Basic
Block Centered Flow Drain
Evapotranspiration
General Head
MT3D
Output Control
PCG
Recharge
River
SIP
SSOR
Well
Utility
Run
Now
Save Script
View
MODFLOW Output File
Drawdown/Head:Contoured Surface
Drawdown/Head:Block
Simulator
Network
Log
Help
Editor
Array
Print Setup
Print
Quit
Edit
Example of Using Modmain
Running From the Command Line
Setting up Files
Project File
Script File
Bibliography (modmain)

Chapter 16: Mt3dmain

The Main Menu
Project
Open Project
View Project
Save Project
Save Preferences
Quit
Quit Without Saving
Packages
Flow File
Basic
Advection
Dispersion
Sink & Source Mixing
Chemical Reaction
Utility
Run
Now
Save Script
View
MT3D Output File
as Contoured Surface
as Block
Simulator
Network
Log
Help
Editor
Example of Using Mt3dmain
Running From the Command Line
Setting up Files
Project File
Script File
Bibliography (mt3dmain)

Chapter 17: Array

The Main Menu
File
Save Preferences
Quit
Array
Array-Array
Array-Constant
Array-Indicator
Array-Reclassification
Array-Series
Array-Array Parameters
Array-Point Parameters
Array-Transform
Log
Help
Example of Using Array
Running From the Command Line
Input & Output Files
Array Mathematics

Chapter 18: Utilities

calc
Numerical and Operation Keypad
lpr_ps
ps_merge
editor


Appendix A: C Print Formats

Appendix B: Makefile and Source Code Requirements

Makefile
Source Code
Module Specific Files
Shared Files
Included Example Data Files
block
contour
grid
histo
modmain
mt3dmain
plotgraph
sisim
surface
vario
variofit

Appendix C: Preference Files

Example plotgraph.prf File

Appendix D: X Resource Files

Graph Resource File

Appendix E: Help Files

Abbreviated plotgraph.help Help File

Appendix F: Bibliography

Appendix G: Software Contributions to UNCERT

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